Human Pathogens

Listed below are the currently available frequency sets for human pathogens found in the free pdf book, available here.

A

Absidia ramosa, see Lichtheimia hongkongensis.

Acanthamoeba castellani

Acetoanaerobium stricklandii ••• Also known as Clostridium stricklandii.

Achromobacter xylosoxidans

Acinetobacter baumanii

Acinetobacter junii

Acinetobacter lwoffii

Acremonium chrysogenum ••• Also known as Cephalosporium acremonium or Cephalosporium chrysogenum. Fungal organism.

Actinobacillus actinomycetemcomitans, see Aggregatibacter actinomycetemcomitans.

Actinomyces bovis

Actinomyces graevenitzii

Actinomyces israelii

Actinomyces naeslundii

Actinomyces viscosus

Adenovirus type 4 (human)

Adenovirus type 5 (human)

Adenovirus type 7 (human)

Adenovirus type 11 (human)

Adenovirus type 12 (human)

Adenovirus type 14 (human)

Adenovirus type 21 (human)

Adenovirus type 36 (human)

Adenovirus type 37 (human)

Adenovirus type 40 (human)

Adenovirus type 41 (human)

Aerococcus urinae

Aeromonas caviae

Aeromonas hydrophila

Aeromonas veronii

Aggregatibacter actinomycetemcomitans ••• Previously known as Actinobacillus actinomycetemcomitans.

Aggregatibacter aphrophilus

Alcaligenes faecalis

Alternaria alternata ••• Fungal organism.

Anaerococcus prevotii ••• Formerly known as Peptostreptococcus prevotii.

Anaplasma phagocytophilum

Ancylostoma caninum ••• Common name: dog hookworm.

Ancylostoma duodenale & Necator americanus ••• Two closely-related species of human hookworm.

Angiostrongylus general ••• Includes Angiostrongylus cantonensis & Angiostrongylus costaricensis (respective common names: rat lungworm & American rat lungworm).

Anisakis simplex ••• Common name: herring worm.

Arthroderma obtusum & Arthroderma gypseum ••• Fungal organisms. Alternate or old names for A. obtusum: Microsporum nanum, Microsporum gypseum variant nanum, Nannizzia obtusa, Nannizzia nana. Alternate or old names for A. gypseum: Microsporum gypseum, Nannizzia gypsea.

Ascaris suum (also known as Ascaris lumbricoides) ••• Common name: pig roundworm.

Aspergillus flavus ••• Fungal organism.

Aspergillus fumigatus ••• Fungal organism.

Aspergillus lentulus ••• Fungal organism.

Aspergillus nidulans ••• Fungal organism.

Aspergillus niger ••• Fungal organism.

Aspergillus parasiticus ••• Fungal organism.

Astrovirus human

ATCV-1 virus ••• Full name: Acantocystis turfacea Chlorella virus 1.

Atopobium vaginae

Avian erythroblastosis virus ••• Contains erb oncogene(s).

Avian myelocytomatosis virus ••• Contains myc oncogene.

B

Babesia bovis

Babesia divergens

Babesia duncani

Babesia microti

Bacillus anthracis

Bacillus cereus

Bacillus licheniformis

Bacteroides buccalis, see Prevotella buccalis.

Bacteroides caccae

Bacteroides distasonis

Bacteroides fragilis

Bacteroides ovatus

Bacteroides vulgatus

Barmah forest virus

Bartonella bacilliformis

Bartonella birtlesii

Bartonella bovis

Bartonella clarridgeiae

Bartonella elizabethae

Bartonella grahamii

Bartonella henselae

Bartonella koehlerae

Bartonella quintana

Bartonella rochalimae

Bartonella taylorii

Bartonella tribocorum

Bartonella vinsonii

Bartonella washoensis

Baylisascaris procyonis ••• Common name: raccoon roundworm.

Bilophila wadsworthia

BK virus

Blastocystis species subtypes 1-4 ••• These are the more common Blastocystis subtypes that infect humans, with subtypes 1-3 being the most common. The former name of the organism was loosely called “Blastocystis hominis”, which has now been officially retired by the scientific community due to frequent cross-species zoonotic passage between animals and humans.

Blastomyces dermatitidis ••• Fungal organism.

Bordetella pertussis & parapertussis

Borna disease virus

Borrelia afzelii ••• Also known as Borreliella afzelii (synonym). This Borrelia species is associated with lyme type of disease.

Borrelia bavariensis ••• Previously known as Borrelia garinii subspecies bavariensis. Also known as Borreliella bavariensis (synonym). This Borrelia species is associated with lyme type of disease.

Borrelia bissettii ••• Also known as Borreliella bissettii (synonym). This Borrelia species is associated with lyme type of disease.

Borrelia burgdorferi ••• Also known as Borreliella burgdorferi (synonym). This Borrelia species is associated with lyme type of disease.

Borrelia californiensis ••• Also known as Borreliella californiensis (synonym). This Borrelia species is associated with lyme type of disease.

Borrelia coriaceae ••• This Borrelia species is associated with relapsing fever.

Borrelia duttonii ••• This Borrelia species is associated with relapsing fever.

Borrelia garinii ••• Also known as Borreliella garinii (synonym). This Borrelia species is associated with lyme type of disease.

Borrelia hermsii ••• This Borrelia species is associated with relapsing fever.

Borrelia hispanica ••• This Borrelia species is associated with relapsing fever.

Borrelia mayonii ••• Also known as Borreliella mayonii (synonym). This Borrelia species is associated with lyme type of disease.

Borrelia miyamotoi ••• This Borrelia species is associated with relapsing fever.

Borrelia parkeri ••• This Borrelia species is associated with relapsing fever.

Borrelia persica ••• This Borrelia species is associated with relapsing fever.

Borrelia recurrentis ••• This Borrelia species is associated with relapsing fever.

Borrelia spielmanii ••• Also known as Borreliella spielmanii (synonym). This Borrelia species is associated with lyme type of disease.

Borrelia turicatae ••• This Borrelia species is associated with relapsing fever.

Borrelia valaisiana ••• Also known as Borreliella valaisiana (synonym). This Borrelia species is associated with lyme type of disease.

Borrelia vincentii, see Treponema vincentii.

Bovine leukemia virus

Brachyspira pilosicoli

Brucella abortus

Brucella canis

Brucella melitensis

Brucella suis

Brugia malayi ••• A filarial roundworm.

Brugia timori ••• A filarial roundworm.

Burkholderia cepacia & cenocepacia ••• Burkholderia cenocepacia is formerly named Burkholderia cepacia genomovar III.

Burkholderia mallei ••• Formerly known as Pseudomonas mallei.

Burkholderia multivorans

Burkholderia pseudomallei ••• Formerly known as Pseudomonas pseudomallei.

C

Campylobacter fetus

Campylobacter gracilis

Campylobacter jejuni

Campylobacter rectus

Campylobacter showae

Campylobacter upsaliensis

Candida albicans ••• Fungal organism.

Candida auris ••• Fungal organism.

Candida famata, see Debaromyces hansenii.

Candida glabrata ••• Fungal organism.

Candida guilliermondi, see Meyerozyma guilliermondi. Fungal organism.

Candida krusei ••• Also known as Pichia kudriavzevii. Fungal organism.

Candida lusitaniae, see Clavispora lusitaniae.

Candida parapsilosis ••• Fungal organism.

Candida sake ••• Fungal organism.

Candida tropicalis ••• Fungal organism.

Capnocytophaga ochracea

Chickenpox virus, see Human herpesvirus 3.

Chikungunya virus

Chlamydia muridarum

Chlamydia trachomatis

Chlamydophila caviae

Chlamydophila pecorum

Chlamydophila pneumoniae ••• Also known as Chlamydia pneumoniae.

Chlamydophila psittaci

Citrobacter amalonaticus

Citrobacter braakii

Citrobacter freundii

Citrobacter koseri

Cladosporium anthropophilum ••• Fungal organism.

Cladosporium cladosporioides ••• Fungal organism.

Cladosporium sphaerospermum ••• Fungal organism.

Clavispora lusitaniae ••• Also known as Candida lusitaniae. Fungal organism.

Clonorchis sinensis ••• Common name: Chinese liver fluke.

Clostridium bolteae

Clostridium botulinum

Clostridium difficile

Clostridium histolyticum, see Hathewaya histolytica.

Clostridium perfringens

Clostridium ramosum

Clostridium scindens

Clostridium sporogenes

Clostridium tetani

Coccidioides general ••• Fungal organism. Set includes items from two species, Coccidioides immitis and Coccidioides posadasii.

Colorado tick fever virus

Comamonas kerstersii

Comamonas testosteroni

Coronavirus human ••• “Common cold” variety of coronavirus. SARS or MERS coronaviruses not included.

Coronavirus MERS ••• MERS = Middle Eastern Respiratory Syndrome.

Coronavirus SARS-CoV-2 ••• Associated with covid-19.

Corynebacterium diphtheriae

Corynebacterium equi, see Rhodococcus equi.

Corynebacterium jeikeium

Corynebacterium pseudodiphtheriticum

Corynebacterium tuberculostearicum

Corynebacterium urealyticum

Corynebacterium vaginalis, see Gardnerella vaginalis.

Coxiella burnetti

Coxsackievirus A, types 1-12

Coxsackievirus A, types 13-24

Coxsackievirus B, types 1-6

Cronobacter sakazakii ••• Formerly known as Enterobacter sakazakii.

Cryptococcus gatti ••• Alternate names: Cryptococcus bacillisporus, Filobasidiella bacillispora. Fungal organism.

Cryptococcus neoformans ••• Fungal organism.

Cryptosporidium hominis

Cryptosporidium parvum

Cutavirus ••• Also known as Primate protovirus 1.

Cutibacterium acnes, see Propionibacterium acnes.

Cyclospora cayetanensis

Cytomegalovirus, see Human herpesvirus 5.

D

Debaromyces hansenii ••• Alternate or older names: Candida famata, Pichia hansenii, Torulaspora hansenii, Debaromyces tyrocola var. hansenii. Fungal organism.

Demodex brevis ••• Eyelash / small hair mite.

Demodex folliculorum ••• Eyelash / small hair mite.

Dengue virus ••• Types 1-4.

Dental pathogens common ••• See Streptococcus mutans, Treponema denticola, Porphyromonas gingivalis, and Fusobacterium nucleatum.

Dermatophagoides farinae ••• Common name: American house dust mite.

Dermatophagoides pteronyssinus ••• Common name: European house dust mite.

Desulfovibrio desulfuricans

Desulfovibrio piger

Desulfovibrio vulgaris

Dialister invisus

Dicrocoelium dendriticum & chinensis ••• Common names: Lancet liver fluke, small liver fluke.

Dictyostelium discoideum

Dientamoeba fragilis

Dipetalonema gracile

Diphyllobothrium latum & nihonkaiense ••• Common name: broad tapeworm.

Dipylidium caninum ••• Common names: Flea tapeworm, dog tapeworm, cat tapeworm.

Dirofilaria immitis ••• Common name: dog heartworm.

Dirofilaria repens ••• A filarial nematode parasite.

E

Eastern equine encephalitis virus ••• Includes items from various isolates.

Ebola virus ••• Zaire strain. Not intended as a substitute for medical intervention.

Echinococcus ••• Set includes Echinococcus granulosus and Echinococcus multilocularis. A type of tapeworm.

Echinostoma hortense ••• A trematode parasite.

Echovirus type 7

Echovirus type 9

Echovirus type 11

Echovirus type 30

E. coli, see Escherichia coli

Ehrlichia canis

Ehrlichia chaffeensis

Eikenella corrodens

Empedobacter brevis

Encephalotozoon cuniculi ••• Fungal organism.

Entamoeba histolytica

Enterobacter aerogenes

Enterobacter cloacae ••• subspecies cloacae

Enterobacter sakazakii, see Cronobacter sakazakii.

Enterobius vermicularis ••• Common name: human pinworm.

Enterococcus faecalis

Enterococcus faecium

Enterococcus gallinarum

Enterovirus 68 ••• Also known as Enterovirus D68 or EV68 or EVD68.

Enterovirus 69

Enterovirus 70

Enterovirus 71

Epidermophyton floccosum ••• Fungal organism.

Epstein-Barr virus, see Human herpesvirus 4.

Erythrovirus B19 ••• See Human parvovirus B19.

Escherichia coli (E. coli) ••• Includes items from numerous strains.

Eubacterium nodatum

Eurytrema pancreaticum ••• Common name: pancreatic fluke.

F

Fasciola gigantica ••• A species of liver fluke.

Fasciola hepatica ••• Common names: sheep liver fluke or common liver fluke.

Fasciolopsis buski ••• Common name: intestinal fluke.

Filifactor alocis

Finegoldia magna ••• Formerly known as Peptostreptococcus magnus.

Flavimonas oryzihabitans, see Pseudomonas oryzihabitans.

Francisella tularensis ••• Includes items from various subspecies and strains.

Fusarium solani ••• Fungal organism.

Fusobacterium necrophorum

Fusobacterium nucleatum

Fusobacterium varium

G

Galactomyces candidum ••• Also known as Geotrichum candidum. Fungal organism.

Gardnerella vaginalis ••• Formerly called Haemophilus vaginalis or Corynebacterium vaginalis.

Geotrichum candidum, see Galactomyces candidum.

Giardia lamblia ••• Also known as Giardia intestinalis.

Gnathostoma spinigerum ••• A nematode parasite.

Gongylonema pulchrum ••• Common name: gullet worm.

Gordonia bronchialis

Granulicatella adiacens

H

Haemonchus contortus ••• Common names: red stomach worm, barber pole worm.

Haemophilus ducreyi

Haemophilus influenzae

Haemophilus parainfluenzae

Haemophilus vaginalis, see Gardnerella vaginalis.

Hafnia alvei

Hantavirus ••• Also known as Hantaan virus.

Hathewaya histolytica ••• Previously known as Clostridium histolyticum.

Heartland virus ••• Also known as Heartland banadavirus.

Helicobacter hepaticus

Helicobacter pylori ••• Previously known as Campylobacter pylori.

Hendra virus

Hepatitis A virus

Hepatitis B virus

Hepatitis C virus

Hepatitis D (delta) virus

Hepatitis E virus

Hepatitis G virus ••• Also knnown as Hepatitis GB virus C.

Herpes simplex 1 virus, see Human herpesvirus 1.

Herpes simplex 2 virus, see Human herpesvirus 2.

HERV, see Human endogenous retrovirus.

Heyndrickxia oleronia ••• Formerly known as Bacillus oleronius.

Histoplasma capsulatum ••• Fungal organism.

HIV-1 (Human immunodeficiency virus 1)

HTLV-1 (Human T-cell lymphotropic virus type 1; also known as Human T-cell leukemia virus type 1)

HTLV-2 (Human T-cell lymphotropic virus type 2)

HTLV-3 (Human T-cell lymphotropic virus type 3)

Human endogenous retrovirus E

Human endogenous retrovirus HRES-1

Human endogenous retrovirus K ••• Strain capable of replication.

Human endogenous retrovirus W

Human foamy virus (also known as Human spumaretrovirus)

Human herpesvirus 1 (also known as Herpes simplex 1 virus)

Human herpesvirus 2 (also known as Herpes simplex 2 virus)

Human herpesvirus 3 (also known as Varicella zoster virus or Chickenpox virus)

Human herpesvirus 4 (also known as Epstein-Barr virus)

Human herpesvirus 5 (also known as Cytomegalovirus)

Human herpesvirus 6A

Human herpesvirus 6B

Human herpesvirus 7

Human herpesvirus 8 (also known as Kaposi's sarcoma virus)

Human immunodeficiency virus 1 (HIV-1)

Human mouse mammary tumor virus

Human orthopneumovirus, see Respiratory syncytial virus.

Human papillomavirus (HPV) type 1

Human papillomavirus (HPV) type 2

Human papillomavirus (HPV) type 3

Human papillomavirus (HPV) type 4

Human papillomavirus (HPV) type 5

Human papillomavirus (HPV) type 6

Human papillomavirus (HPV) type 7

Human papillomavirus (HPV) type 8

Human papillomavirus (HPV) type 9

Human papillomavirus (HPV) type 10

Human papillomavirus (HPV) type 11

Human papillomavirus (HPV) type 15

Human papillomavirus (HPV) type 16

Human papillomavirus (HPV) type 17

Human papillomavirus (HPV) type 18

Human papillomavirus (HPV) type 20

Human papillomavirus (HPV) type 24

Human papillomavirus (HPV) type 27

Human papillomavirus (HPV) type 28

Human papillomavirus (HPV) type 29

Human papillomavirus (HPV) type 31

Human papillomavirus (HPV) type 33

Human papillomavirus (HPV) type 35

Human papillomavirus (HPV) type 36

Human papillomavirus (HPV) type 38

Human papillomavirus (HPV) type 39

Human papillomavirus (HPV) type 40

Human papillomavirus (HPV) type 41

Human papillomavirus (HPV) type 43

Human papillomavirus (HPV) type 45

Human papillomavirus (HPV) type 47

Human papillomavirus (HPV) type 49

Human papillomavirus (HPV) type 50

Human papillomavirus (HPV) type 51

Human papillomavirus (HPV) type 52

Human papillomavirus (HPV) type 53

Human papillomavirus (HPV) type 54

Human papillomavirus (HPV) type 56

Human papillomavirus (HPV) type 58

Human papillomavirus (HPV) type 59

Human papillomavirus (HPV) type 62

Human papillomavirus (HPV) type 66

Human papillomavirus (HPV) type 88

Human papillomavirus (HPV) type 91

Human papillomavirus (HPV) type 95

Human parainfluenza virus types 1-4 ••• Types 1 & 3 are also known (respectively) as Human respirovirus type 1 and type 3; types 2 & 4 are also known (respectively) as Human rubulavirus type 2 and type 4.

Human parvovirus B19 ••• Also known as Erythrovirus B19.

Human respirovirus, see Human parainfluenza virus.

Human rubulavirus, see Human parainfluenza virus.

Human spumaretrovirus, see Human foamy virus.

Human T-cell lymphotropic virus type 1 (also known as Human T-cell leukemia virus type 1), see HTLV-1.

Human T-cell lymphotropic virus type 2, see HTLV-2.

Hymenolepis diminuta ••• Common name: rat tapeworm.

Hymenolepis nana ••• Common name: dwarf tapeworm.

I

Influenza A

Influenza A, “Swine” (2009)

Influenza B

J

Japanese encephalitis virus

JC virus

K

Kingella kingae

Klebsiella oxytoca

Klebsiella planticola

Klebsiella pneumoniae, subspecies pneumoniae

Kluyvera ascorbata

Kocuria kristinae

L

La Crosse virus

Lactobacillus iners

Legionella pneumophila

Leishmania braziliensis

Leishmania donovani

Leptospira ••• Includes Leptospira interrogans and Leptospira borgpetersenii species.

Lichtheimia hongkongensis ••• Also known as Lichtheimia ramosa, Absidia ramosa, or Mycocladus ramosus. Fungal organism.

Lichtheimia ramosa, see Lichtheimia hongkongensis.

Listeria monocytogenes

Ljungan virus, see Parechovirus B.

Loa loa ••• Common name, African eye worm.

Louping ill virus

M

Magnusiomyces capitatus ••• Fungal organism; also known as Dipodascus capitatus, Blastoschizomyces capitatus, Geotrichum capitatum, Blastoschizomyces pseudotrichosporon.

Malassezia furfur ••• Fungal organism.

Malassezia globosa ••• Fungal organism.

Malassezia restricta ••• Fungal organism.

Malassezia sympodialis ••• Fungal organism.

Mansonella ozzardi ••• A filarial nematode.

Mansonella perstans ••• A filarial nematode.

Marburg virus

Massilia timonae

Measles virus ••• Also known as Red measles virus or Rubeola virus; not the same pathogen as Rubella virus, the causative agent of German measles.

Merkel cell polyomavirus

MERS coronavirus, see Coronavirus MERS

Metagonimus yokogawai ••• A fluke parasite.

Metastrongylus ••• Includes Metastrongylus salmi & Metastrongylus pudentotectus; common name, pig lungworm.

Methanobrevibacter arboriphilus

Methanobrevibacter smithii

Methanosphaera stadtmanae

Meyerozyma guilliermondi ••• Also known as Candida guilliermondi, Pichia guilliermondi. Fungal organism.

Micrococcus luteus

Microfilaria general ••• Intended for situations in which the exact species is unknown.

Microsporum canis ••• Fungal organism.

Microsporum ferrugineum & Microsporum audouinii ••• Fungal organisms.

Mobiluncus curtisii

Molluscum contagiosum virus

Moraxella catarrhalis

Morganella morganii

Mortierella verticillata, see Podila verticillata.

Mucor circinelloides ••• Fungal organism.

Mumps virus

Mycobacterium abscessus

Mycobacterium avium

Mycobacterium avium subspecies hominissuis, see Mycobacterium hominissus.

Mycobacterium avium subspecies paratuberculosis, see Mycobacterium paratuberculosis.

Mycobacterium bovis

Mycobacterium fortuitum

Mycobacterium hominissus ••• Also known as Mycobacterium avium subspecies hominissuis.

Mycobacterium intracellulare

Mycobacterium kansasii

Mycobacterium lentiflavum

Mycobacterium leprae

Mycobacterium marinum

Mycobacterium paratuberculosis ••• Also known as Mycobacterium avium subspecies paratuberculosis.

Mycobacterium tuberculosis

Mycolicibacterium mucogenicum

Mycoplasma arthritidis

Mycoplasma fermentans

Mycoplasma genitalium

Mycoplasma hominis

Mycoplasma penetrans

Mycoplasma pirum

Mycoplasma pneumoniae

Mycoplasma salivarium

N

Nannizzia gypsea, see Arthroderma gypseum.

Nannizzia nana, see Arthroderma obtusum.

Necator americanus, see Ancylostoma duodenale

Neisseria gonorrhoeae

Neisseria mucosa

Neorickettsia sennetsu

Nocardia cyriacigeorgica ••• Formerly classified as Nocardia asteroides.

Nocardia farcinica

Norovirus / Norwalk virus ••• These closely-related viruses are in one set.

Novosphingobium aromaticivorans

O

Ochrobactrum anthropi

Olsenella uli

Onchocerca volvulus ••• A filarial nematode.

Opisthorchis felineus ••• Common name: cat liver fluke.

Opisthorchis viverrini ••• A species of liver fluke endemic in southeast Asia.

Orientia tsutsugamushi ••• Formerly known as Theileria tsutsugamushi, Rickettsia tsutsugamushi, Rickettsia orientalis, or Rickettsia akamushi.

Orientobilharzia turkestanicum, see Schistosoma turkestanicum.

P

Pantoea agglomerans

Pantoea ananatis

Parachlamydia acanthamoeba

Paracoccidioides brasiliensis ••• Fungal organism.

Paragonimus westermani ••• Common name: Oriental lung fluke.

Parainfluenza virus, see Human parainfluenza virus.

Parechovirus B (also known as Ljungan virus)

Parvimonas micra ••• Formerly known as Peptostreptococcus micros.

Parvovirus B19, human ••• See Human parvovirus B19.

Pasteurella multocida

Pediculus humanus capitus ••• Common name: human head louse.

Penicillium chrysogenum ••• Formerly known as Penicillium notatum. Fungal organism.

Penicillium citrinum ••• Fungal organism.

Penicillium digitatum ••• Fungal organism.

Penicillium marneffei ••• Fungal organism.

Penicillium notatum, see Penicillium chrysogenum.

Peptostreptococcus anaerobius

Peptostreptococcus magnus, see Finegoldia magna.

Peptostreptococcus micros, see Parvimonas micros.

Peptostreptococcus stomatis

Pichia guilliermondi, see Meyerozyma guilliermondi. Fungal organism.

Pichia kudriavzevii, see Candida krusei. Fungal organism.

Photorhabdus asymbiotica

Plasmodium falciparum

Plasmodium vivax

Pneumocystis jiroveci ••• Formerly known as Pneumocystis carinii. Fungal organism.

Podila verticillata ••• Fungal organism.

Poliovirus ••• Includes types 1, 2, and 3.

Porphyromonas endodontalis

Porphyromonas gingivalis

Powassan virus

Prevotella bivia

Prevotella buccalis ••• also known as Bacteroides buccalis.

Prevotella copri

Prevotella denticola

Prevotella intermedia

Prevotella melaninogenica

Prevotella nigrescens

Prevotella oralis

Prevotella oris

Prevotella tannerae

Propionibacterium acnes ••• also known as Cutibacterium acnes.

Propionibacterium propionicum

Proteus mirabilis

Proteus vulgaris

Protochlamydia amoebophila

Providencia alcalifaciens

Providencia rettgeri

Providencia stuartii

Pseudomonas aeruginosa

Pseudomonas fluorescens

Pseudomonas luteola

Pseudomonas mallei, see Burkholderia mallei.

Pseudomonas oryzihabitans

Pseudomonas putida

Pseudomonas stutzeri

Pythium insidiosum ••• Parasitic algae-like oomycetic pathogen.

R

Ralstonia pickettii $15.00

Respiratory syncytial virus ••• Also known as Human orthopneumovirus.

Rhinovirus

Rhizopus oryzae ••• Fungal organism.

Rhodococcus equi ••• Formerly called Corynebacterium equi.

Rickettsia africae

Rickettsia akari

Rickettsia coronii ••• Spotted fever pathogen.

Rickettsia felis ••• Spotted fever pathogen; carried by fleas.

Rickettsia helvetica

Rickettsia prowazekii

Rickettsia rickettsii

Rickettsia typhi

Rift Valley fever virus

Ross River Virus

Rotavirus type A (human) ••• This type primarily infects children.

Rothia dentocariosa

Rubella virus ••• Also known as German measles virus; not the same pathogen as measles virus, the causative agent of red measles or rubeola).

Ruminococcus gnavus

S

Salmonella enteritidis ••• A subspecies associated with food poisoning.

Salmonella infantis

Salmonella typhi & paratyphi A ••• A subspecies associated with typhoid fever.

Salmonella typhimurium ••• A subspecies associated with food poisoning.

Sapovirus

Sarcoptes scabiei, type hominis ••• Also known as human scabies mite.

Schistosoma haematobium ••• Common name: human blood fluke.

Schistosoma indicum & Schistosoma spindale

Schistosoma japonicum ••• Common name: Oriental blood fluke.

Schistosoma mansoni ••• Common name: human blood fluke.

Schistosoma margrebowiei ••• A blood fluke endemic in Africa.

Schistosoma mekongi

Schistosoma spindale, see Schistosoma indicum.

Schistosoma turkestanicum ••• Also known as Orientobilharzia turkestanicum.

Serratia liquefaciens

Serratia marcescens

Serratia plymuthica

Shewanella algae

Shewanella oneidensis

Shigella ••• Includes four species of Shigella: S. boydii, S. dysenteriae, S. flexneri, & S. sonnei.

Shingles virus, see Human herpesvirus 3

Simian parainfluenza virus 5

Simian virus 40 (SV40)

Simkania negevensis ••• A Chlamydia family organism.

Solobacterium moorei

Spirometra erinaceieuropaei ••• A species of tapeworm.

Spiroplasma mirum

Sporothrix schenckii ••• Fungal organism.

Spumaretrovirus, see Human foamy virus.

Stachybotrys chartarum ••• Mold organism.

Stachybotrys chlorohalonata ••• Mold organism.

Staphylococcus aureus ••• Includes MRSA strains.

Staphylococcus epidermidis

Staphylococcus haemolyticus

Staphylococcus intermedius

Staphylococcus lugdunensis

Staphylococcus saprophyticus

Staphylococcus schleiferi

Staphylococcus warneri

Stenotrophomonas maltophilia

St. Louis encephalitis virus

Streptobacillus moniliformis

Streptococcus agalactiae

Streptococcus anginosus

Streptococcus constellatus subspecies pharyngitis

Streptococcus dysgalactiae subspecies equisimilis

Streptococcus equi subspecies zooepidemicus

Streptococcus gallolyticus

Streptococcus gordonii

Streptococcus intermedius

Streptococcus milleri

Streptococcus mitis

Streptococcus mutans

Streptococcus oralis

Streptococcus parasanguinis

Streptococcus pneumoniae

Streptococcus porcinus

Streptococcus pyogenes

Streptococcus salivarius

Streptococcus sanguinis

Streptococcus sobrinus

Streptococcus suis

Streptococcus vestibularis

Strongyloides fuelleborni ••• Common name: threadworm.

Strongyloides stercoralis ••• Common name: threadworm.

Succinivibrio dextrinosolvens

T

Taenia crassiceps ••• Common name: tapeworm; most common in canids.

Taenia general ••• Includes Taenia asiatica, Taenia multiceps, & Taenia saginata (common name for these species: beef tapeworm).

Taenia hydatigena ••• Alternate names: Cysticercus tenuicolis, Cysticercus tenucollis; common names: tapeworm, thin-necked bladderworm.

Taenia saginata ••• Common name: beef tapeworm.

Taenia serialis ••• Common name: canid tapeworm.

Taenia solium ••• Common name: pork tapeworm.

Taenia taeniaeformis ••• Alternate or old names: Hydatigera taeniaeformis, Taenia crassicollis, Cysticercus fasciolaris (larval form), Hydatigera himalayotaenia.

Tannerella forsythensis (forsythia) ••• Old name: Bacteroides forsythus.

Thelazia callipaeda ••• Common name: Oriental eyeworm.

Tick-borne encephalitis virus ••• Also known as FSME virus ("Fruhsommer Meningoenzephalitis Virus"), or “Early summer meningoencephalitis virus”.

Toxocara canis & Toxocara cati ••• Common names: dog roundworm and cat roundworm; Toxocara cati is sometimes called Toxocara felis.

Toxocara malaysiensis ••• Common name, feline roundworm.

Toxoplasma gondii

Treponema denticola

Treponema pallidum

Treponema vincentii ••• Formerly known as Borrelia vincentii.

Trichinella spiralis

Trichobilharzia regenti ••• A species of schistosome.

Trichomonas vaginalis

Trichophyton ••• Includes Trichophyton mentagrophytes and Trichophyton rubrum. Fungal organisms.

Trichophyton schoenleinii ••• Fungal organism.

Trichophyton violaceum ••• Fungal organism.

Trichosporon asahii ••• Fungal organism.

Trichosporon inkin ••• Fungal organism.

Trichostrongylus ••• Includes Trichostrongylus axei & Trichostrongylus vitrinus. Common name, stomach/intestinal hairworm (nematode, roundworm).

Trichuris trichiura ••• Common name: human whipworm.

Tropheryma whipplei

Trueperella pyogenes

Trypanosoma brucei gambiense

Trypanosoma cruzi

U

Ureaplasma parvum

Ureaplasma urealyticum

V

Varicella zoster virus, see Human herpesvirus 3.

Variola virus ••• Common name, smallpox virus.

Veillonella parvula

Venezuelan equine encephalitis virus

Vibrio parahaemolyticus

Vibrio vulnificus

W

Waddlia chondrophila ••• A Chlamydia family organism.

West Nile virus

Western equine encephalitis virus

Wolbachia endosymbiont of Brugia malayi

Wolbachia endosymbiont of Onchocerca volvulus

Wolbachia endosymbiont of Wuchereria bancrofti

Wuchereria bancrofti

X

XMRV ••• Full name, Xenotropic MuLV-related virus (MuLV = murine leukemia virus).

Y

Yellow fever virus

Yersinia enterocolitica

Z

Zika virus